Data Science for Cognitive Neuroscience

DS_CogNeuro

INFO: This course will next take place in SoSe25. Please contact camilla.groiss@tu-berlin.de for any questions.

Instructor: Anuja Negi, Fatma Deniz

Overview

Language English
Credits 6 ECTS
Lecture Period Apr 15 - July 20, 2024
Time Wednesday @ 2-6pm
Location MAR 5.060
Course Website this page
ISIS link


Content

The human brain is an intricate and complex information processing system, giving rise to an exciting interdisciplinary field of research. Understanding how it works is a challenging scientific quest. In recent decades, new brain imaging techniques have allowed us to “see” the brain in action, leading to the growth of cognitive neuroscience. Cognitive neuroscience explores the neural mechanisms that underlie a wide range of cognitive functions, linking brain activity to the tasks it performs. This field fosters exciting collaborations with psychology, biology, physics, and computer science, offering a comprehensive approach to understanding the brain.

If you are intrigued by the inner workings of the brain and eager to employ cutting-edge brain imaging and data analysis tools for it’s exploration, this course is tailored for you! During this course, you will acquire proficiency in utilizing Python programming for comprehending, manipulating, and exploring human brain recordings (such as ECoG, EEG, MEG, and fMRI) You will also learn how to create and test hypotheses about how the brain processes information using real data.  Additionally, you will learn invaluable analysis techniques to make sense of brain recording data.

This course provides hands-on experience in the data analysis of brain data, enabling you to gain a deep insight into the experiments and data employed in the cognitive neuroscience field. Furthermore, the data analysis techniques and investigative approaches you learn will be readily transferable to research in other disciplines.

Learning Outcomes

  • Understanding of experiments and data used in cognitive neuroscience research.
  • First hand experience with real brain recorded data, eg. EEG and fMRI.
  • Identifying and retrieving relevant information from brain data and interpreting them using data analysis techniques.
  • Learn how to develop and test a hypothesis.

Structure

Each block of the integrated course will be structured as follows:

  1. Lecture
  2. Tutorial
  3. Programming assignment - start solving it together and take-home

Schedule

April 17, 2024 Introduction to Cognitive Neuroscience [organisation] [lecture] [extra]
April 24, 2024 Introduction to electroencephalogram (EEG) data: loading and plotting raw data in Python [lecture] [tutorial] [assignment]
May 8, 2024 Events and artifacts in neural data [lecture] [tutorial] [assignment]
May 15, 2024 Introduction to event related potentials (ERPs) [lecture] [tutorial] [assignment]
May 22, 2024 Filtering and Time-Frequency Representation [lecture] [recap] [tutorial] [assignment]
May 29, 2024 Correlation, Regression, and Modeling [lecture] [tutorial] [assignment]
June 5, 2024 Introduction to functional magnetic resonance imaging (fMRI): loading and plotting raw data in Python [lecture] [tutorial] [assignment]
June 12, 2024 Masking and Visualizing fMRI data in 3D: Introduction to pycortex [lecture] [tutorial] [assignment]
June 19, 2024 Event-related averages of fMRI data and fMRI impulse response function [lecture] [tutorial] [assignment]
June 26, 2024 Multiple Regression [lecture] [tutorial] [assignment]
July 3, 2024 Hypothesis Testing [lecture] [tutorial] [assignment]
July 10, 2024 Encoding Models and Model Prediction [lecture] [tutorial] [assignment]
July 17, 2024 (Optional) False Discovery Rate, Complex Encoding Models & Decoding [tutorial]
Aug 15-16, 2024 ORAL EXAM! -


Exam

Date July 29, 2024
Grading Graded
Type Oral
Prerequisite Submission of assignments
Register by July 15, 2024